FileType		Read submission file type															
study	sample	name	library_name	library_strategy	library_source	library_selection	library_layout	library_construction_protocol	platform	instrument_model	insert_size	file_name	file_md5	forward_file_name	forward_file_md5	reverse_file_name	reverse_file_md5
PRJEB79726	FS42595433	Alectoris graeca PacBio HiFi WGS data	pr_106 PacBio HiFi WGS	WGS	GENOMIC	size fractionation	SINGLE	The HiFi library was constructed using the “Preparing whole genome and metagenome libraries using SMRTbell prep kit 3.0” (PN 102-166-600 (April 2022)) from PacBio. DNA was sheared on a Megaruptor 3 (Diagenode) instrument to a target size of 15-20 kb, followed by QC on a Femto Pulse instrument (Agilent). DNA repair, ligation of SMRTbell adapters, post-ligation clean-up and size selection were performed to create a sequencing library. Primer annealing and polymerase binding were performed on the library using the Revio polymerase kit (PN 102-739-100). Finally, one SMRTcell 25M was sequenced on the PacBio Revio System.	PACBIO_SMRT	Revio		/bge-alectoris-graeca/m84045_240717_194654_s3.hifi_reads.bc2086.bam	cd6fd84e69fb73d7560d1ea452b06ff9				
PRJEB79726	FS42595444	Alectoris graeca Illumina Hi-C data kidney	HC010-2A1A-kidney Illumina Hi-C	Hi-C	GENOMIC	PCR	PAIRED	Hi-C library was created as described in the Dovetail Omni-C Kit USER GUIDE v2.0 and library QC was performed using the Qubit dsDNA HS Assay kit and the Agilent High Sensitivity/DNA 12000 DNA Kit.	ILLUMINA	Illumina NovaSeq X	558			/bge-alectoris-graeca/CTTGTCGA+CGATGTTC_R1.fastq.gz	2d9834908496f3804ded8eeacb201483	/bge-alectoris-graeca/CTTGTCGA+CGATGTTC_R2.fastq.gz	4a441e35c69ae8fadb1655e9bfdc8ec0
PRJEB79726	FS42594031	Alectoris graeca Illumina Hi-C data blood	HC010-1B1A-blood Illumina Hi-C	Hi-C	GENOMIC	PCR	PAIRED	Hi-C library was created as described in the Dovetail Omni-C Kit USER GUIDE v2.0 and library QC was performed using the Qubit dsDNA HS Assay kit and the Agilent High Sensitivity/DNA 12000 DNA Kit.	ILLUMINA	Illumina NovaSeq X	547			/bge-alectoris-graeca/GAGACGAT+ACCGGTTA_R1.fastq.gz	4c1bc1a9583fb8a1e70864e38307377b	/bge-alectoris-graeca/GAGACGAT+ACCGGTTA_R2.fastq.gz	cbe49764879411caeb88db8bd9080620
PRJEB79726	ERGA_BP_5516_03	Alectoris graeca Illumina RNA-Seq data kidney	RE022-1-4-pool Illumina RNA-Seq	RNA-Seq	TRANSCRIPTOMIC	Oligo-dT	PAIRED	The RNA sequencing library is prepared using the TruSeq Stranded mRNA Library Preparation Kit with poly-A selection (cat# 20020595, Illumina Inc.). Library preparation is performed according to the manufacturer's protocol (#1000000040498). Before library preparation, the quality and quantity of the samples are evaluated using either the Fragment Analyzer system (DNF-471 kit) or the TapeStation 4200 (RNA ScreenTape), both systems from Agilent Technologies.	ILLUMINA	Illumina NovaSeq X	150			/bge-alectoris-graeca/Alectoris_graeca_RE022-1-4-pool_R1_001.fastq.gz	7025d82df7495d8f478c20863e9e8e2a	/bge-alectoris-graeca/Alectoris_graeca_RE022-1-4-pool_R2_001.fastq.gz	8d6fbcfa05b0e349a71fd0435267e9ef